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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
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Recommended citation: Mallory Embree, Cameron Martino, "Methods, apparatuses, and systems for analyzing microorganism strains in complex heterogeneous communities, determining functional relationships and interactions thereof, and diagnostics and biostate management based thereon." Methods, apparatuses, and systems for analyzing microorganism strains in complex heterogeneous communities, determining functional relationships and interactions thereof, and diagnostics and biostate management based thereon, 2018.
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Recommended citation: Mallory Embree, Cameron Martino, Norman Pitt, Jordan Embree, Corey Dodge, "Methods for supporting grain intensive and or energy intensive diets in ruminants by administration of a synthetic bioensemble of microbes or purified strains therefor." Methods for supporting grain intensive and or energy intensive diets in ruminants by administration of a synthetic bioensemble of microbes or purified strains therefor, 2018.
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Recommended citation: Mallory Embree, Grant Gogul, Cameron Martino, Norm Pitt, "Microbial compositions and methods of use for improving fowl production." Microbial compositions and methods of use for improving fowl production, 2018.
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Recommended citation: Mallory Embree, Grant Gogul, Cameron Martino, Norm Pitt, "Improving fowl production by administration of a synthetic bioensemble of microbes or purified strains thereof." Improving fowl production by administration of a synthetic bioensemble of microbes or purified strains thereof, 2019.
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Published in Msystems, 2018
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Recommended citation: Daniel McDonald, Embriette Hyde, Justine Debelius, James Morton, Antonio Gonzalez, Gail Ackermann, Alexander Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, et. al"American gut: an open platform for citizen science microbiome research." Msystems, 2018.
Published in Journal of Animal Science, 2018
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Recommended citation: BA Clemmons, C Martino, M Embree, EA Melchior, BH Voy, SR Campagna, PR Myer, "Biochemical and microbial biomarkers of feed efficiency in Black Angus steers." Journal of Animal Science, 2018.
Published in Hepatology communications, 2018
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Recommended citation: Sena Bluemel, Lirui Wang, Cameron Martino, Suhan Lee, Yanhan Wang, Brandon Williams, Angela Horvath, Vanessa Stadlbauer, Karsten Zengler, Bernd Schnabl, "The role of intestinal C-type regenerating islet derived-3 lectins for nonalcoholic steatohepatitis." Hepatology communications, 2018.
Published in Journal of Animal Science, 2018
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Recommended citation: BA Clemmons, C Martino, M Embree, EA Melchior, BH Voy, SR Campagna, PR Myer, "Biochemical and microbial biomarkers of feed efficiency in Black Angus steers." Journal of Animal Science, 2018.
Published in Hepatology communications, 2018
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Recommended citation: Sena Bluemel, Lirui Wang, Cameron Martino, Suhan Lee, Yanhan Wang, Brandon Williams, Angela Horvath, Vanessa Stadlbauer, Karsten Zengler, Bernd Schnabl, "The Role of Intestinal C-type Regenerating Islet Derived-3 Lectins for Nonalcoholic Steatohepatitis." Hepatology communications, 2018.
Published in mSystems, 2018
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Recommended citation: Daniel McDonald, Embriette Hyde, Justine Debelius, James Morton, Antonio Gonzalez, Gail Ackermann, Alexander Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, et. al"American gut: an open platform for citizen science microbiome research." mSystems, 2018.
Published in MSystems, 2019
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Recommended citation: Cameron Martino, James Morton, Clarisse Marotz, Luke Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler, "A novel sparse compositional technique reveals microbial perturbations." MSystems, 2019.
Published in Experimental Biology and Medicine, 2019
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Recommended citation: Se Jin, Douglas Woodhams, Cameron Martino, Celeste Allaband, Andre Mu, Sandrine Javorschi-Miller-Montgomery, Jan Suchodolski, Rob Knight, "Engineering the microbiome for animal health and conservation." Experimental Biology and Medicine, 2019.
Published in Nature microbiology, 2019
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Recommended citation: Livia Zaramela, Cameron Martino, Frederico Alisson-Silva, Steven Rees, Sandra Diaz, L{\'e}a Chuzel, Mehul Ganatra, Christopher Taron, Patrick Secrest, Cristal Zu{\~n}iga, et. al"Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates." Nature microbiology, 2019.
Published in Genome biology, 2019
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Recommended citation: Jon Sanders, Sergey Nurk, Rodolfo Salido, Jeremiah Minich, Zhenjiang Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy Arthur, Feng Chen, et. al"Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads." Genome biology, 2019.
Published in Scientific reports, 2019
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Recommended citation: Brooke Clemmons, Cameron Martino, Joshua Powers, Shawn Campagna, Brynn Voy, Dallas Donohoe, James Gaffney, Mallory Embree, Phillip Myer, "Rumen bacteria and serum metabolites predictive of feed efficiency phenotypes in beef cattle." Scientific reports, 2019.
Published in Scientific reports, 2019
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Recommended citation: Brooke Clemmons, Cameron Martino, Liesel Schneider, Josh Lefler, Mallory Embree, Phillip Myer, "Temporal stability of the ruminal bacterial communities in beef steers." Scientific reports, 2019.
Published in MSystems, 2019
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Recommended citation: Cameron Martino, James Morton, Clarisse Marotz, Luke Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler, "A Novel Sparse Compositional Technique Reveals Microbial Perturbations." MSystems, 2019.
Published in Experimental Biology and Medicine, 2019
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Recommended citation: Se Jin, Douglas Woodhams, Cameron Martino, Celeste Allaband, Andre Mu, Sandrine Javorschi-Miller-Montgomery, Jan Suchodolski, Rob Knight, "Engineering the microbiome for animal health and conservation." Experimental Biology and Medicine, 2019.
Published in Scientific reports, 2019
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Recommended citation: Brooke Clemmons, Cameron Martino, Liesel Schneider, Josh Lefler, Mallory Embree, Phillip Myer, "Temporal Stability of the Ruminal Bacterial Communities in Beef Steers." Scientific reports, 2019.
Published in Nature microbiology, 2019
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Recommended citation: Livia Zaramela, Cameron Martino, Frederico Alisson-Silva, Steven Rees, Sandra Diaz, L{\'e}a Chuzel, Mehul Ganatra, Christopher Taron, Patrick Secrest, Cristal Zu{\~n}iga, et. al"Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates." Nature microbiology, 2019.
Published in Environment international, 2020
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Recommended citation: Farnaz Fouladi, Maximilian Bailey, William Patterson, Michael Sioda, Ivory Blakley, Anthony Fodor, Roshonda Jones, Zhanghua Chen, Jeniffer Kim, Frederick Lurmann, et. al"Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing." Environment international, 2020.
Published in bioRxiv, 2020
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Recommended citation: Cameron Martino, Benjamin Kellman, Daniel Sandoval, Thomas Clausen, Clarisse Marotz, Se Song, Stephen Wandro, Livia Zaramela, Rodolfo Ben{\'\i}tez, Qiyun Zhu, et. al"Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity." bioRxiv, 2020.
Published in Msystems, 2020
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Recommended citation: Bryn Taylor, Franck Lejzerowicz, Marion Poirel, Justin Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, et. al"Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome." Msystems, 2020.
Published in bioRxiv, 2020
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Recommended citation: Kalen Cantrell, Marcus Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, et. al"EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets." bioRxiv, 2020.
Published in Msphere, 2020
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Recommended citation: Samantha Huey, Lingjing Jiang, Marcus Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David Russell, Shobha Udipi, Aparna Thorat, Varsha Thakker, et. al"Nutrition and the Gut Microbiota in 10-to 18-Month-Old Children Living in Urban Slums of Mumbai, India." Msphere, 2020.
Published in Current protocols in bioinformatics, 2020
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Recommended citation: Mehrbod Estaki, Lingjing Jiang, Nicholas Bokulich, Daniel McDonald, Antonio Gonz{\'a}lez, Tomasz Kosciolek, Cameron Martino, Qiyun Zhu, Amanda Birmingham, Yoshiki V{\'a}zquez-Baeza, et. al"QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data." Current protocols in bioinformatics, 2020.
Published in bioRxiv, 2020
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Recommended citation: Julia Gauglitz, Wout Bittremieux, Candace Williams, Kelly Weldon, Morgan Panitchpakdi, Francesca Di, Christine Aceves, Elizabeth Brown, Nicole Sikora, Alan Jarmusch, et. al"Reference data based insights expand understanding of human metabolomes." bioRxiv, 2020.
Published in Cell, 2020
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Recommended citation: Thomas Clausen, Daniel Sandoval, Charlotte Spliid, Jessica Pihl, Hailee Perrett, Chelsea Painter, Anoop Narayanan, Sydney Majowicz, Elizabeth Kwong, Rachael McVicar, et. al"SARS-CoV-2 infection depends on cellular heparan sulfate and ACE2." Cell, 2020.
Published in NAR genomics and bioinformatics, 2020
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Recommended citation: Marcus Fedarko, Cameron Martino, James Morton, Antonio Gonz{\'a}lez, Gibraan Rahman, Clarisse Marotz, Jeremiah Minich, Eric Allen, Rob Knight, "Visualizing’omic feature rankings and log-ratios using Qurro." NAR genomics and bioinformatics, 2020.
Published in BioTechniques, 2021
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Recommended citation: Justin Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo Salido, Carolina Carpenter, Livia Zaramela, Jeremiah Minich, et. al"A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities." BioTechniques, 2021.
Published in Microbiome, 2021
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Recommended citation: Andre Mu, Daniel McDonald, Alan Jarmusch, Cameron Martino, Caitriona Brennan, Mackenzie Bryant, Gregory Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen, et. al"Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection." Microbiome, 2021.
Published in Nature biotechnology, 2021
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Recommended citation: Cameron Martino, Liat Shenhav, Clarisse Marotz, George Armstrong, Daniel McDonald, Yoshiki V{\'a}zquez-Baeza, James Morton, Lingjing Jiang, Maria Dominguez-Bello, Austin Swafford, et. al"Context-aware dimensionality reduction deconvolutes gut microbial community dynamics." Nature biotechnology, 2021.
Published in JDS Communications, 2021
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Recommended citation: BM Goetz, J Lefler, MA Abeyta, EA Horst, EJ Mayorga, M Al-Qaisi, S Rodriguez-Jimenez, C Martino, A Izzo, R La, et. al"Effects of dietary microbial feed supplement on production efficacy in lactating dairy cows." JDS Communications, 2021.
Published in Frontiers in physiology, 2021
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Recommended citation: Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel Elijah, Pieter Dorrestein, Rob Knight, et. al"Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome." Frontiers in physiology, 2021.
Published in bioRxiv, 2021
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Recommended citation: Justin Shaffer, Louis-F{\'e}lix Nothias, Luke Thompson, Jon Sanders, Rodolfo Salido, Sneha Couvillion, Asker Brejnrod, Shi Huang, Franck Lejzerowicz, Holly Lutz, et. al"Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment." bioRxiv, 2021.
Published in Med, 2021
Recommended citation: Se Song, Jincheng Wang, Cameron Martino, Lingjing Jiang, Wesley Thompson, Liat Shenhav, Daniel McDonald, Clarisse Marotz, Paul Harris, Caroll Hernandez, Nora Henderson, Elizabeth Ackley, Deanna Nardella, Charles Gillihan, Valentina Montacuti, William Schweizer, Melanie Jay, Joan Combellick, Haipeng Sun, Izaskun Garcia-Mantrana, Fernando Raga, Maria Collado, Juana Rivera-Viñas, Maribel Campos-Rivera, Jean Ruiz-Calderon, Rob Knight, Maria Dominguez-Bello, "Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding." Med, 2021. http://dx.doi.org/10.1016/j.medj.2021.05.003
Published in Microbiome, 2021
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Recommended citation: Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel Diner, Gibraan Rahman, et. al"SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment." Microbiome, 2021.
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Undergraduate course, University 1, Department, 2014
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Workshop, University 1, Department, 2015
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